Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934624.1_cds_XP_016480628.1_72048
CDS Infomation

[gene=LOC107801757] [db_xref=GeneID:107801757] [protein=vetispiradiene synthase 3] [protein_id=XP_016480628.1] [location=join(13461..13580,13669..13957,14068..14440,14537..14755,14850..14988,15122..15367,15481..15777)] [gbkey=CDS]
Sequence

ATGGCCCCTGCTGCTGCAGTACTCAGTAACTACGAAGAGGAGGAGATTGTTCGCCCCGTT
GCGGACTTCTCTCCAAGTCTTTGGGGTGATCGTTTCCATTCATTCTCCCTCGACAATCAG
GTTGCAGGAAAGTATGCTCAAGAGATTGAAACATTGAAGGAACAAACAAGGAGTATGTTA
ATGTCCGCTGCTTCTGGAACTACTACATTAACACTGGCTGAAAAGTTGAATCTCATAGAC
ATTGTTGAACGTCTTGGAATTGCTTATCACTTTGAGAAACAAATAGACGACATGTTGGAC
CAAATATACAATGCTGATCCCAACTTCGAGGGTCTTGAATACAATGATTTATGTATTTTG
TCCCTTCAGTTTCGACTCCTTAGACAACATGGTTACAATATCTCTCCAAAAATTCTCAGC
AGATTCCAGTATGCAAACGGCAAATTCAAGGAGTCTCTTAGCGATAATGTAACGGGTCTG
TTGAACTTATACGAAGCTTCACATGTAAGGACTCATGGAGAAGACATCTTAGAAGAGGCG
CTTGCTTTCTCGACAGCTCATCTTGAATCTGCAGCTCCACATTTGAAGTCACCTCTAAGT
AAGCAAGTGACACATGCCCTTGAGCAATCTCTGCATAAGAGCATTCCAAGAGTTGAGACA
CGTTACTTCATCTCCATCTATGAAGAGGAGGAATTGAATAATGATATCTTGCTTCGATTT
GCCAAATTGGATTTCAATGTACTTCAAATGTTGCACAAACAAGAACTCAGCGAGGTTTCA
AGGTGGTGGAAAGATTTGGATTTTGTGACGACACTTCCATATGCTAGGGATAGAGCAGTT
GAGTGCTACTTTTGGACGGTGGGAGTTTACTCTGAACCTCAATATTCTCAGGCTCGTGTC
ATGCTTGCTAAGACTATAGCAATGATTTCAATAGTAGATGATACATTTGATGCTTATGGA
ATTGTTAAAGAACTTGAGGTCTACACTGATGCCATACAGAGGTGGGATGTTAGCCAAATC
AATCGGCTACCAGATTACATGAAAATCAGTTATAAAGCATTGTTGGATCTCTACAATGAT
TATGAGAAGGAATTGTCAAATGATGGCAGATCCTCTGTTGTTCACTATGCCAAAGAAAGA
ATGAAAGAAATCGTGAGAAACTATTTTGTGGAAGCAAAATGGTTCATTGAAGGATATATG
CCACCTGTTTCTGAGTATTTGAGCAATGCATTAGCTACTAGCACTTATTACTTGCTTACT
ACTACATCCTACTTGGGGATGAAGTGTGCTAACAAGGAAGATTTTGAATGGTTGGACAAG
AACCCTAAAATTCTTGAAGCCAATGTGACCTTGTGTCGGGTCATTGATGACATAGCCACC
TATGAGGTTGAGAAGAGTAGAGGTCAGATAGCAACTGGAATTGAGTGCTACATGAGGGAT
TATGGCGTATCAACGGAAGAGGCAATGGAAAAATTTCAAGAAATGGCTGAGATAGCATGG
AAGGATGTAAACGAAGGAATTCTTCGACCAACTCCTGTATCTACGAAGATTCTTACTCGT
ATTCTGAATCTCGCCCGCATTATTGATGTCACTTACAAGCACAATCAAGATGGATACACT
CATCCTGAAAAAGTTCTCAAACCTCACATTATCGCCTTACTGGTGGACTCTATTGAAATT
TAA

Peptide Sequence

PEP ID

XP_016480628.1
PEP Infomation

PREDICTED: vetispiradiene synthase 3 [Nicotiana tabacum]
Sequence

MAPAAAVLSNYEEEEIVRPVADFSPSLWGDRFHSFSLDNQVAGKYAQEIETLKEQTRSML
MSAASGTTTLTLAEKLNLIDIVERLGIAYHFEKQIDDMLDQIYNADPNFEGLEYNDLCIL
SLQFRLLRQHGYNISPKILSRFQYANGKFKESLSDNVTGLLNLYEASHVRTHGEDILEEA
LAFSTAHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVETRYFISIYEEEELNNDILLRF
AKLDFNVLQMLHKQELSEVSRWWKDLDFVTTLPYARDRAVECYFWTVGVYSEPQYSQARV
MLAKTIAMISIVDDTFDAYGIVKELEVYTDAIQRWDVSQINRLPDYMKISYKALLDLYND
YEKELSNDGRSSVVHYAKERMKEIVRNYFVEAKWFIEGYMPPVSEYLSNALATSTYYLLT
TTSYLGMKCANKEDFEWLDKNPKILEANVTLCRVIDDIATYEVEKSRGQIATGIECYMRD
YGVSTEEAMEKFQEMAEIAWKDVNEGILRPTPVSTKILTRILNLARIIDVTYKHNQDGYT
HPEKVLKPHIIALLVDSIEI

Transcript Sequence

Gene sequence data has not been registered.